PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g035370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 477aa    MW: 52914.8 Da    PI: 7.0597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g035370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13331377455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Sopen06g035370.1 331 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 377
                       799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4149227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.66327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18327393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.00E-14330381No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17331395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10331377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-15333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAEKFFLKGE DKVNMEGVLG SEAVEFFSWS ASNHMLTEFT SSRGDLGVQQ ALCKIVEGSD  60
WTYAIYWQVA KSKSGKSALI WGDGHCRETK IGQGEGANDS AHQKMMDGNK KKMVLQKIHT  120
CFGGSEDDNI AAKLESVSDV EVFYLTSMYY IFPFDKPSSP SQSFNSARSI WGSDLKGCLE  180
HFQSRSYLAK LARFESLVFV PLKSGVVELG SVKSIPEDQN LIQMVKTSVV VSNPPQPKAN  240
TKIFGRELSL GGAKSGPISI NFSPKVEEEL SFASDSYEVQ AALGSSQVYG NSSNGYRSDE  300
GEGKLYKEEL DERKPRKRGR KPANGREEAL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  360
DKASLLGDAI AYITDLQARI RVLDAEKEMV GDKQKQQVIP EIDFHQRQDD AVVRVGCPLN  420
AHPVSRVLKT FQEHQVVAQE SNVSLTENGE LVHMFSIRAP GPAAEDLKEK LTAALSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-13482269189Transcription factor MYC3
4rqw_B2e-13482269189Transcription factor MYC3
4rs9_A2e-13482269189Transcription factor MYC3
4yz6_A2e-13482269189Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312320RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080258.10.0PREDICTED: transcription factor bHLH3
SwissprotO234871e-161BH003_ARATH; Transcription factor bHLH3
TrEMBLK4CAQ30.0K4CAQ3_SOLLC; Uncharacterized protein
STRINGSolyc06g083980.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66692433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-162bHLH family protein